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Publications

PhD Thesis

  • A Routier Multimodal brain imaging for the study of progressive primary aphasia. PhD Thesis, 2018, Sorbonne University, Paris, France

Journal Articles

  • E Thibeau-Sutre, M Diaz, R Hassanaly, A Routier, D Dormont, O Colliot, N Burgos. ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing. Computer Methods and Programs in Biomedicine, 2022
  • A Morin, A Funkiewiez, A Routier, R Le Bouc, N Borderies, D Galanaud, R Levy, M Pessiglione, B Dubois, B Eymard, CC Michon, N Angeard, A Behin, P Laforet, T Stojkovic, C Azuar. Unravelling the impact of frontal lobe impairment for social dysfunction in myotonic dystrophy type I. Brain Communications, 2022
  • M Norgaard et al. PET-BIDS, an extension to the brain imaging data structure for positron emission tomography. Scientific Data, 2022
  • J Wen, J Samper-González, S Bottani, A Routier, N Burgos, T Jacquemont, S Fontanella, S Durrleman, S Epelbaum, A Bertrand, O Colliot. Reproducible evaluation of diffusion MRI features for automatic classification of patients with Alzheimer's disease. Neuroinformatics, 2021
  • A Routier, N Burgos, M Diaz, M Bacci, S Bottani, O El-Rifai, S Fontanella, P Gori, J Guillon, A Guyot, R Hassanaly, T Jacquemont, P Lu, A Marcoux, T Moreau, J Samper-González, M Teichmann, E Thibeau-Sutre, G Vaillant, J Wen, A Wild, MO Habert, S Durrleman, O Colliot. Clinica: an open source software platform for reproducible clinical neuroscience studies. Frontiers in Neuroinformatics, 2021
  • J Wen *, E Thibeau-Sutre *, J Samper-Gonzalez, A Routier, S Bottani, S Durrleman, N Burgos, O Colliot. Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation. Medical Image Analysis, 2020
  • M Sundqvist *, A Routier *, B Dubois, O Colliot, M Teichmann. The white matter module-hub network of semantics revealed by semantic dementia. Journal of Cognitive Neuroscience, 2020
  • J Wen, H Zhang, D Alexander, S Durrleman, A Routier, D Rinaldi, M Houot, P Couratier, D Hannequin, F Pasquier, J Zhang, O Colliot, I Le Ber, A Bertrand. Neurite density is reduced in the presymptomatic phase of C9orf72 disease. JNNP, 2019
  • C Sanches, A Routier, O Colliot, M Teichmann. The structure of the mental lexicon: what primary progressive aphasias reveal. Neuropsychologia, 2018
  • J Samper-González, N Burgos, S Bottani, S Fontanella, P Lu, A Marcoux, A Routier, J Guillon, M Bacci, J Wen, A Bertrand, H Bertin, MO Habert, S Durrleman, T Evgeniou, O Colliot. Reproducible evaluation of classification methods in Alzheimer's disease: framework and application to MRI and PET data. NeuroImage, 2018
  • A Routier, MO Habert, A Bertrand, A Kas, M Sundqvist, J Mertz, PM David, H Bertin, S Belliard, F Pasquier, K Bennys, O Martinaud, F Fretcharry-Bouyx, O Moreaud, O Godefroy, J Pariente, M Puel, P Couratier, C Boutoleau-Bretonniere, B Laurent, R Migliaccio, B Dubois, O Colliot, M Teichmann. Structural, microstructural and metabolic alterations in Primary Progressive Aphasia variants. Frontiers in Neurology, 2018
  • A Marcoux, N Burgos, A Bertrand, M Teichmann, A Routier, J Wen, J Samper-González, S Bottani, S Durrleman, MO Habert, O Colliot. An Automated Pipeline for the Analysis of PET Data on the Cortical Surface. Frontiers in Neuroinformatics, 2018
  • I Koval, JB Schiratti, A Routier, M Bacci, O Colliot, S Allassonniere, S Durrleman. Spatiotemporal propagation of the cortical atrophy during the course of Alzheimer’s Disease: Population and individual patterns. Frontiers in Neurology, 2018
  • A Mendes, A Bertrand, F Lamari, O Colliot, A Routier, O Godefroy, F Etcharry-Bouyx, O Moreaud, F Pasquier, P Couratier, K Bennys, M Vercelletto, O Martinaud, B Laurent, J Pariente, M Puel, S Epelbaum, S Belliard, T Kaaouana, L Fillon, M Chupin, B Dubois, M Teichmann. Cerebral microbleeds and CSF Alzheimer biomarkers in primary progressive aphasias. Neurology, 2018
  • A Bertrand, J Wen, D Rinaldi, M Houot, S Sayah, A Camuzat, C Fournier, S Fontanella, A Routier, P Couratier, F Pasquier, MO Habert, D Hannequin, O Martinaud, P Caroppo, R Levy, B Dubois, A Brice, S Durrleman, O Colliot, I Le Ber. Early Cognitive, Structural, and Microstructural Changes in Presymptomatic C9orf72 Carriers Younger Than 40 Years. JAMA neurology, 2018
  • P Gori, O Colliot, L Marrakchi-Kacem, Y Worbe, A Routier, C Poupon, A Hartmann, N Ayache, S Durrleman. Double diffeomorphism: combining morphometry and structural connectivity analysis. IEEE Transactions on Medical Imaging, 2018
  • A Bône, M Louis, A Routier, J Samper-González, M Bacci, B Charlier, O Colliot, S Durrleman. Prediction of the progression of subcortical brain structures in Alzheimer’s disease from baseline. MICCAI Workshop on Mathematical Foundations of Computational Anatomy, 2017
  • T Jacquemont, F De Vico Fallani, A Bertrand, S Epelbaum, A Routier, B Dubois, H Hampel, S Durrleman, O Colliot. Amyloidosis and neurodegeneration result in distinct structural connectivity patterns in mild cognitive impairment. Neurobiology of aging, 2017
  • P Caroppo et al. Lateral Temporal Lobe: An Early Imaging Marker of the Presymptomatic GRN Disease? Journal of Alzheimer's Disease, 2015
  • E.E Bron et al. Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: the CADDementia challenge. NeuroImage, 2015

Peer-reviewed Conference Articles

  • I Koval, JB Schiratti, A Routier, M Bacci, O Colliot, S Allassonnière, S Durrleman. Statistical learning of spatiotemporal patterns from longitudinal manifold-valued networks. MICCAI, 2017
  • C Cury, M Lorenzi, D Cash, N David, J Nicholas, A Routier, J Rohrer, S Ourselin, S Durrleman, M Modat. Spatio-temporal shape analysis of cross-sectional data for detection of early changes in neurodegenerative disease. International Workshop on Spectral and Shape Analysis in Medical Imaging, 2016
  • JB Schiratti, S Allassonniere, A Routier, O Colliot, S Durrleman. A mixed-effects model with time reparametrization for longitudinal univariate manifold-valued data. IPMI, 2015
  • P Gori, O Colliot, L Marrakchi-Kacem, Y Worbe, A Routier, C Poupon, A Hartmann, N Ayache, S Durrleman. Joint Morphometry of Fiber Tracts and Gray Matter Structures Using Double Diffeomorphisms. IPMI, 2015
  • A Routier, P Gori, A Graciano Fouquier, S Lecomte, O Colliot, S Durrleman. Evaluation of morphometric descriptors of deep brain structures for the automatic classification of patients with Alzheimer’s disease. MICCAI Challenge on Computer-Aided Diagnosis of Dementia based on structural MRI data (CADDementia), 2014 Paper Presentation
  • A Imperiale, A Routier, S Durrleman, P Moireau. Improving efficiency of data assimilation procedure for a biomechanical heart model by representing surfaces as currents. International Conference on Functional Imaging and Modeling of the Heart, 2013

Abstracts

  • N Debs *, A Routier *, B Lorenzi, L Wood, F Nicolas, MM Rohé. Contribution of PIRADS annotation for the detection of prostate significant cancer using deep learning. ECR, Vienna, 2022
  • A Routier *, N Debs *, L Kate Wood, F Nicolas, MM Rohé. Automatic quality control of diffusion magnetic resonance images for prostate cancer in clinical routine. ECR, Vienna, 2022
  • A Routier *, N Debs *, L Kate Wood, F Nicolas, MM Rohé. Contrôle qualité automatique de l'IRM de diffusion de la prostate en routine clinique. JFR, Paris, 2022
  • A Routier, A Marcoux, M Diaz Melo, J Samper-González, A Wild, A Guyot, J Wen, E Thibeau-Sutre, S Bottani, S Durrleman, N Burgos, O Colliot. New longitudinal and deep learning pipelines in the Clinica software platform. OHBM, Remote, 2020
  • A Routier, A Marcoux, M Diaz Melo, J Guillon, J Samper-Gonzàlez, J Wen, S Bottani, A Guyot, E Thibeau-Sutre, M Teichmann, MO Habert, S Durrleman, N Burgos, O Colliot. New advances in the Clinica software platform for clinical neuroimaging studies. OHBM, Rome, 2019
  • A Routier, MO Habert, A Bertrand, A Kas, PM David, H Bertin, O Godefroy, F Etcharry-Bouyx, O Moreaud, F Pasquier, P Couratier, K Bennys, C Boutoleau Bretoniere, O Martinaud, B Laurent, J Pariente, M Puel, S Belliard, R Migliaccio, B Dubois, O Colliot, M Teichmann. Structural, microstructural and metabolic alterations in Primary Progressive Aphasia variants. OHBM, Singapore, 2018
  • A Routier, J Guillon, N Burgos, J Samper-González, J Wen, S Fontanella, S Bottani, T Jacquemont, A Marcoux, P Gori, P Lu, T Moreau, M Bacci, S Durrleman, O Colliot. Clinica: an open source software platform for reproducible clinical neuroscience studies. OHBM, Singapore, 2018
  • A Routier, M Prastawa, B Charlier, C Doucet, J Glaunès, S Durrleman. Deformetrica: a software for statistical analysis of anatomical shapes. OHBM, Honolulu, 2015